Sep 23 – 27, 2024
ESRF Auditorium
Europe/Paris timezone

Fast GPU-friendly indexing (cell reorientation) algorithm for X-ray crystallography.

Sep 25, 2024, 5:10 PM
15m
Hybrid event (ESRF Auditorium)

Hybrid event

ESRF Auditorium

EPN Campus ESRF - ILL 71 Av. des Martyrs, 38000 Grenoble
Talk Data Reduction Data Reduction

Speaker

Hans Christian Stadler Kleeb (Paul Scherrer Institute)

Description

Authors: Piero Gasparotto, Luis Barba, Hans-Christian Stadler,
Greta Assmann, Henrique Mendonça, Alun W. Ashton, Markus Janousch,
Filip Leonarski and Benjamı́n Béjar

TORO (TOrch-powered Robust Optimization) [1] is a new algorithm
for indexing diffraction patterns, applicable when the unit cell
geometry is known. Originally based on the PyTorch framework a
dedicated version in CUDA has been developed. The algorithm is
capable of indexing frames in less than a millisecond. It
therefore allows real-time data processing. Not only being fast
its quality is also on par with the XGandalf indexing algorithm. A
user-friendly interface allows the configuration to the particular
needs of an experiment and the inclusion into the CrystFEL data
processing pipeline.

  1. Gasparotto P, Barba L, Stadler H-C, Assmann G, Mendonça H,
    Ashton A, et al. TORO Indexer: A PyTorch-Based Indexing Algorithm
    for kHz Serial Crystallography. ChemRxiv. 2023;
    doi:10.26434/chemrxiv-2023-wnm9n (submitted to Journal of Applied
    Crystallography, in proof).
Abstract publication I agree that the abstract will be published on the web site

Primary author

Hans Christian Stadler Kleeb (Paul Scherrer Institute)

Co-author

Markus Janousch (Paul Scherrer Institut)

Presentation materials